PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016057m
Common NameEUTSA_v10016057mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 442aa    MW: 49564.4 Da    PI: 7.8789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016057mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-18116162148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W+ I++ +  gR +kqc++rw+++l
  Thhalv10016057m 116 KGQWTAEEDRKLIKLVTQHGERKWTMISENLE-GRAGKQCRERWHNHL 162
                      799*****************************.*************97 PP
2Myb_DNA-binding53.17.4e-17168210145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+  lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Thhalv10016057m 168 KDSWSEEEERVLVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 210
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.162111166IPR017930Myb domain
SuperFamilySSF466891.19E-28114209IPR009057Homeodomain-like
SMARTSM007172.4E-15115164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-26117169IPR009057Homeodomain-like
PfamPF139211.9E-19119177No hitNo description
CDDcd001675.21E-14119162No hitNo description
SMARTSM007171.0E-13167215IPR001005SANT/Myb domain
PROSITE profilePS5129419.317167217IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-20170215IPR009057Homeodomain-like
CDDcd001675.91E-10170213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEDRRIQEKI HVHGAAPPLT AVERFLYGQK KDDLCSKKQE LSIERPNLKT TREIGIRNDN  60
KENLMSGPTK EKKVAVTCGN RNVIGDMIVK GATRDYQKST TCKAITKKRP YRYLIKGQWT  120
AEEDRKLIKL VTQHGERKWT MISENLEGRA GKQCRERWHN HLRPDIKKDS WSEEEERVLV  180
EAHTRIGNKW AEIAKLIQGR TENSIKNHWN ATKRRQNSKR KYKRSKNAGD GDECDMDDLS  240
PSAKRPCVLQ DYIRSIENNE KDNGENIITT GGNNVLATSN LVHFDSDVDG DSTSSLLDDP  300
YDEELLFLKK MFATHSISLE NIDLSQGLDQ ISQSSSSGFM INSPNPKPNL NNNTVGADNG  360
TMVKDAANTS HLASDIYLSD LLNGPASSTS SSFLSTNNTE QGGENGFLAA QANSGSERRE  420
MDLIEMLSGS TRGSNIWFPL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-451142162104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-4411421656158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-4411421656158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-451142162104C-Myb DNA-Binding Domain
1msf_C5e-451142162104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212223KRRQNSKRKYKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016057m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399605.10.0transcription factor MYB64
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLV4LMK40.0V4LMK4_EUTSA; Uncharacterized protein
STRINGXP_006399605.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]