PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016298m
Common NameEUTSA_v10016298mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 747aa    MW: 82213.1 Da    PI: 6.3774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016298mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-0862104347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Thhalv10016298m  62 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 104
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1054109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-557107IPR009057Homeodomain-like
PROSITE profilePS5129313.5258109IPR017884SANT domain
SMARTSM007175.1E-659107IPR001005SANT/Myb domain
CDDcd001671.22E-562105No hitNo description
PfamPF002493.2E-662104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MLKPIAAHYC AMQAEKEVLL NTEGPIDEGR ITNQNSNPNI ASSASISVAQ FPAKKPTRQW  60
AAWTHQEEES FFTALRQVGK NFEKITSRVQ SKNKDQVRHY YYRLVRRMNK LLGPELSLDA  120
KNPKDTNAAM LRWWSLLEKY SCKASKLHLK PRRFKLFIEA LEHQLLKDRR KSIRKRGCQG  180
ETFSSSSLGN ISSNSRDRGL DNRPFKLIIC DGQNVKKLGP GRTFTKHGES LGVSLGDEKE  240
DTAFGRGGRQ RRKQGYRKWE KAAIDGVSLV ADAAEHLERT SIDKDMDGQK ELGPTSNLTG  300
KSPLSLCSSG DVPLSDANMQ FSGKLKLQLF PIDECTRRSL EMDKHNPHLE LTLSNRKKIS  360
SVLEHLNRKW GSSSCASGEL MLFPYNARKE TVTCHQRWTH DSFLSAAEVH SMVGSPSIFR  420
LRYGWFVHDA SGSIISQVPT SASCPSLGDD MNMDEANEVN EFNMLLTESG PLSVHSTAEQ  480
APSVVCASGE IHDRPAESGD NYEPALATVT PFEHMSSGNA LSAGEWADSL TNISIGDLLS  540
EVPNDIDSDD VDPPVTEGSH CLLRDVSFAS DSFDAAIAAH ILRHQNKPSA LLPVTSGSSS  600
LWDDEETRDA FSFQKNRLAA SPKLANVASP GGVGRVNDEP SHIVKAISSE EGPCNPPDHE  660
DPMEEGPTDP HTMDSPGKIH CGLADVYWPD SLGPLDLDIR SSKYTEDLIL SESLGGLSRL  720
IATSLDAFQN CSLFGFDSKK DKSNMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016298m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269780.0AK226978.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-39-I17.
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410872.10.0TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLV4LP170.0V4LP17_EUTSA; Uncharacterized protein
STRINGXP_006410872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1