PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10016331m

Common Name

EUTSA_v10016331mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 700aa MW: 77297.2 Da PI: 6.475

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10016331m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00058	536	573	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Thhalv10016331m 536 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 573 67799************55......5555557777777776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.7E-32	6	165	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	6.63E-4	517	574	No hit	No description
PROSITE profile	PS50888	11.28	523	572	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-5	536	580	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-4	536	591	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MGSTYQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHVVNNSP DAKDCGVIPN 60 NMHGGHQAHD PLGLAVAKMA YHVYSLGEGT VGQVAVSGEH QWVFPEYYEN CHSPFEFQNV 120 WKGQISAGIK TILVVAVGPS GVVQLGSLRK VDEDVTLVNH IRHMFLALKD PLADHAANLM 180 QCYMNNSLRL PNIRSECSHV KAFPDCFGEV DKAMDVEESN ILTQYKLRRS DSMSYNTPSS 240 YLLTEKAAQI IGDRETVKGS TCGSYSGVTF GFPVDLVDAR HENQVGTNII SDAPHVGMTS 300 GCKDPRGLDP NIHHHVLNNT SSSALAMEAE RLITSQSFPS LDSTFHTSST DKESRFDALV 360 SSRYAFAGSE LLEALGSGFK QTSRGHEELA TSEHGSTIRP TDDMSHSQLT FDSGPENLLD 420 AVVANVCHSD GNARDDIMSS RSVQSMLTSM EIAEPSGQKK HIIVNPIDSA MNQLPPAEVD 480 RQQNPSDICG AFSSIGFSST CPSSSSDQFQ ASLEMPKKNK KRAKPGESSR PRPRDRQLIQ 540 DRIKELRELV PNGSKCSIDS LLERTIKHML FLQNVTKHAD KLSKSTNTKM QQKETGTQGS 600 SCAVEVGGHL QVCSIIVENL NKQGMVLIEM LCEECSHFLE IANVIRSLDL IILRGITEAQ 660 GEKTWICFVV ESQNNKVMQR MDILWSLVQI FQPKANGKR*

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MGSTYQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHVVNNSP DAKDCGVIPN  60
NMHGGHQAHD PLGLAVAKMA YHVYSLGEGT VGQVAVSGEH QWVFPEYYEN CHSPFEFQNV  120
WKGQISAGIK TILVVAVGPS GVVQLGSLRK VDEDVTLVNH IRHMFLALKD PLADHAANLM  180
QCYMNNSLRL PNIRSECSHV KAFPDCFGEV DKAMDVEESN ILTQYKLRRS DSMSYNTPSS  240
YLLTEKAAQI IGDRETVKGS TCGSYSGVTF GFPVDLVDAR HENQVGTNII SDAPHVGMTS  300
GCKDPRGLDP NIHHHVLNNT SSSALAMEAE RLITSQSFPS LDSTFHTSST DKESRFDALV  360
SSRYAFAGSE LLEALGSGFK QTSRGHEELA TSEHGSTIRP TDDMSHSQLT FDSGPENLLD  420
AVVANVCHSD GNARDDIMSS RSVQSMLTSM EIAEPSGQKK HIIVNPIDSA MNQLPPAEVD  480
RQQNPSDICG AFSSIGFSST CPSSSSDQFQ ASLEMPKKNK KRAKPGESSR PRPRDRQLIQ  540
DRIKELRELV PNGSKCSIDS LLERTIKHML FLQNVTKHAD KLSKSTNTKM QQKETGTQGS  600
SCAVEVGGHL QVCSIIVENL NKQGMVLIEM LCEECSHFLE IANVIRSLDL IILRGITEAQ  660
GEKTWICFVV ESQNNKVMQR MDILWSLVQI FQPKANGKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10016331m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410260.1	0.0	transcription factor bHLH155
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	E4MWT8	0.0	E4MWT8_EUTHA; mRNA, clone: RTFL01-15-P09
TrEMBL	V4MGN5	0.0	V4MGN5_EUTSA; Uncharacterized protein
STRING	XP_006410260.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Thhalv10016331m
Entrez Gene	18027153

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]