PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016408m
Common NameEUTSA_v10016372mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 601aa    MW: 66614.1 Da    PI: 7.3706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016408mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08264284526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Thhalv10016408m 264 PCPEFRK-GSCPKGDSCEYAHG 284
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.3E-1440182IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.01E-1275155IPR020683Ankyrin repeat-containing domain
PfamPF127964.9E-778145IPR020683Ankyrin repeat-containing domain
SMARTSM002484.4E-478108IPR002110Ankyrin repeat
PROSITE profilePS5029713.73578176IPR020683Ankyrin repeat-containing domain
CDDcd002049.35E-1280176No hitNo description
SMARTSM002483.9113145IPR002110Ankyrin repeat
SMARTSM003566.3E-5259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976259286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5264285IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5264284IPR000571Zinc finger, CCCH-type
SMARTSM0035637294317IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465294318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MCGSKSNLCS SKTLTEAELM RRKSEEEEGV AAATCLLELA ACDDLPSFRR EIEEKSLEID  60
EPGFWYCRRV GSKKMGFEER TPLMVAAMYG SIDVLNYIIA TGKSDVNRVF GDEKVTALHC  120
AVSGCSVSIV EVIKILLDAS ASPNCLDANG NKPVDLLVRA SRFVPNQSRK AVEILLTGNH  180
GSVSLMEDEE EEVKSVVMTK YPADASLPDI NEGVYGTDEF RMYSFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYPY TCVPCPEFRK GSCPKGDSCE YAHGVFESWL HPAQYRTRLC  300
KDETGCARRV CFFAHRRDEL RPVNASTGSA MVSPRSCNQS PEMPVMSPLT LGSSPMNSPM  360
ANNGVPLSPR NNGGLWQNRV NSLTPPPLQL NSSRLKSSLS ARDMDVEMEL RLRRLSDYKS  420
SNLEESFGSY DSSSSVMQLQ SPSRHSQMNH YPSSPVRQGF ESSAAMAAAV MKARSSAFAK  480
RSLSFKPAPV TSSNVSDWGS PNGKLEWGMQ REELNKLRRS ASFGIHGNGN NMSRPARDYS  540
DEPDVSWVNS LVKESAPERA FGMTERVGNT VNGAEGRDRF KLPSWAEQMY IDHEKQQIVA  600
*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016408m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534400.0AK353440.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411267.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLV4M8Q70.0V4M8Q7_EUTSA; Uncharacterized protein
STRINGXP_006411266.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein