PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016429m
Common NameEUTSA_v10016429mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 582aa    MW: 64032.1 Da    PI: 7.6227
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016429mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07111130626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C+ff + G+C+ G+ CkF H+
  Thhalv10016429m 111 CKFFVK-GWCNKGNFCKFVHV 130
                      ******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-6105129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807105132IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4110130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSDSDMDIDD DEVQVQVKHT SARESELLGR PIEASDSQND LKKHSAEQSK IMKGTSVSFE  60
KSTLKISGNI GKKLEDEKGT ILSRFPAPGI TAAQSFPSGN EPEQKRAALV CKFFVKGWCN  120
KGNFCKFVHV NEISNHTSPQ QVASNMAGSS GIQSVEERRI LDGKEGVRAL NGVTSLHTRG  180
DISLVNPPSV QRVFPFNNEM RFMPSQQNMG RESLQNCGAD VTGNRSLFNN NSNSFALRSS  240
FVQENRSLIT SYRKTDMESS GPAWTVPSFS SVPMNQYAST LRNIENRNNM YGSGSLPTLQ  300
GTSVSSVKDA EEGNTTSYEK KVSSNDWEPS EPFKASFTIP PYILPSSDAL YDPFIENPED  360
RSLNAPSSSK GKHARKNTRQ QKDGDSASDP QARDCNNDDK NSSCSQNQYQ EPVARKNLVA  420
HGVVEGVATS VVDQNDATTP SKEISSSAAV ENRVVLKRSK PAGHESWHRS DGSSHQKMLK  480
SDEIDGEVRS SDAGTKVTRQ FRTAVVETIK EMLKPLWREG RLTKDVHNMI VKRSAEKIVS  540
TAVQFHQVPT ETESVEQYLS MSAPKIVKLV EGYVEKYGKP S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016429m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016807.10.0protein FRIGIDA-ESSENTIAL 1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLV4NYI50.0V4NYI5_EUTSA; Uncharacterized protein
STRINGXP_006410533.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]