PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016772m
Common NameEUTSA_v10016755mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 392aa    MW: 44704.8 Da    PI: 4.1353
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016772mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.33.1e-3064158397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      ++++ws++ e+v+L  ++d++++t++s+ +d+d+fy +vk+ i++++sk+ql++Ki++LKk+f ++++++ +gk  sf++++d++if+ s++iW
  Thhalv10016772m  64 SKMIWSKNEELVILGSIVDYEKETKMSYRSDWDGFYGYVKDFIEANFSKQQLMDKIKNLKKRFLNNQARSIKGKGLSFTNTDDDEIFKTSMIIW 157
                      789******************************************************************************************* PP

           DUF573  97 g 97 
                       
  Thhalv10016772m 158 A 158
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-2365157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVSKKRLTCR DDSDDSSSDC LEIRPSGLPL PSSLLTRKHD DDISGTETML RKRKQAKTIA  60
SSSSKMIWSK NEELVILGSI VDYEKETKMS YRSDWDGFYG YVKDFIEANF SKQQLMDKIK  120
NLKKRFLNNQ ARSIKGKGLS FTNTDDDEIF KTSMIIWATN ETERASNENI DQAKDVPCVE  180
HESADENDEN MDQATAKVDV PSEENELVNE NMDPAQDVPF AEHAQANENM EQENEDVPYA  240
EHEQVDENMD QENEDVPYAE HERVDENVDQ ENVDVPNAEH EQANENMDQE NDVPDVEHEP  300
VSDITLENGK GEDEEGEEAG VDEMATLQDA LEAMTWYQSF GQYQQNRLRQ NLKNIGAQRR  360
KELADEWKAL LGEEMRLYAR KLTLAARLAS A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016772m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410807.10.0GLABROUS1 enhancer-binding protein-like 3 isoform X2
RefseqXP_006410809.10.0GLABROUS1 enhancer-binding protein-like 3 isoform X1
SwissprotQ9SJM42e-93STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLV4NZ650.0V4NZ65_EUTSA; Uncharacterized protein
STRINGXP_006410809.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.15e-82DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]