PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10016819m

Common Name

EUTSA_v10016819mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 372aa MW: 40920.9 Da PI: 6.3942

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10016819m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	149	206	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se Thhalv10016819m 149 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 206 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-17	145	209	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	147	210	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.97E-10	149	200	No hit	No description
Pfam	PF00170	1.7E-9	149	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-9	149	204	No hit	No description
CDD	cd14703	1.16E-22	150	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDDPSNAKSN QCPPLANPAP TPAPFRGPYH RRAHSEVQFR LPEDLDLSEP FGGFDELGSE 60 DDLFCSYMDI EKLGSGSGSA SDSAGPSAPR SDNPFSAENG GLGRDDAGNS RPRHRHSLSV 120 DGSSTLESIE AKKAMAPDKL AELWVVDPKR AKRIIANRQS AARSKERKAR YILELERKVQ 180 TLQTEATTLS AQLSLFQRDT TGLSSENTEL KLRLQVMEQQ AKLRDALNDQ LKKEVERLKF 240 ATGEVSPADA YNLGMAHMQY SQQQPQQSYY QHHQQQTDAQ NLQQMTHQFH LFQPNNNQNP 300 NITSSSSCQN PPSAHQLMHH ATSNASGQSH SFSEAMHEDP LGRLQGLDIS SCGRGSNFGR 360 SDTVSESSST M*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDDPSNAKSN QCPPLANPAP TPAPFRGPYH RRAHSEVQFR LPEDLDLSEP FGGFDELGSE  60
DDLFCSYMDI EKLGSGSGSA SDSAGPSAPR SDNPFSAENG GLGRDDAGNS RPRHRHSLSV  120
DGSSTLESIE AKKAMAPDKL AELWVVDPKR AKRIIANRQS AARSKERKAR YILELERKVQ  180
TLQTEATTLS AQLSLFQRDT TGLSSENTEL KLRLQVMEQQ AKLRDALNDQ LKKEVERLKF  240
ATGEVSPADA YNLGMAHMQY SQQQPQQSYY QHHQQQTDAQ NLQQMTHQFH LFQPNNNQNP  300
NITSSSSCQN PPSAHQLMHH ATSNASGQSH SFSEAMHEDP LGRLQGLDIS SCGRGSNFGR  360
SDTVSESSST M*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10016819m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	0.0	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	0.0	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	0.0	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411330.1	0.0	bZIP transcription factor 18
Swissprot	O22873	0.0	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	V4MJI3	0.0	V4MJI3_EUTSA; Uncharacterized protein
STRING	XP_006411330.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10016819m
Entrez Gene	18027548

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]