PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016842m
Common NameEUTSA_v10016842mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 365aa    MW: 39785.2 Da    PI: 8.1085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016842mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087192214123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Thhalv10016842m 192 YECKTCNRTFPSFQALGGHRASH 214
                      99**********99999998887 PP
2zf-C2H211.60.00086270292123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  Thhalv10016842m 270 HECSICGSEFASGQALGGHMRRH 292
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-8191214No hitNo description
PfamPF139123.4E-13191216IPR007087Zinc finger, C2H2
SMARTSM003550.052192214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575192219IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-8265292No hitNo description
PfamPF139122.5E-11269293IPR007087Zinc finger, C2H2
SMARTSM003550.031270292IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAPPSSSSLP LFSLSLLFSL VSSLHIINTK NLILSLQFRS FLYWVCFLID FLELGCSCFL  60
INYFLVLIIM MGQDHEVGSD QTQIIKRKRT KRQRSSSSTF LLAAATTVTS TSSSAGGGGE  120
GRAVSDEYNS SAISSPVTAT DCTVEEEDTA ICLIMLARGA VPSPDLKISR KAEKILHQKI  180
SSSTENSSFY VYECKTCNRT FPSFQALGGH RASHKKPRTS MEEKTKLPLM QPKSSGSEEG  240
QNSHFKVSGS ALASQASNNN VIINKANKVH ECSICGSEFA SGQALGGHMR RHRTATTAVS  300
PAATTVEVSR NSTEEEMENL SRSMEKRKYL PLDLNLPAPE DDLRESKFQG IIFSATPALI  360
DCHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016842m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004277.10.0zinc finger protein ZAT5
SwissprotQ681X41e-157ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLV4M4X40.0V4M4X4_EUTSA; Uncharacterized protein
STRINGXP_006409841.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]