PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016847m
Common NameEUTSA_v10016847mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 364aa    MW: 40523.1 Da    PI: 7.3758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016847mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12297342655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Thhalv10016847m 297 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 342
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15294351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-11295344No hitNo description
Gene3DG3DSA:4.10.280.103.1E-13296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSNSHNHHY DPNHISSSGS GLLRFRSAPS SVLAAFVDDE KSGFDSDRLL SRFASSNGGN  60
DDLDLPNPSE FEDKSPVSLT NTSVSYAATL PPPPRQTEPS SFLGLPPHYP RQSKGMMNTI  120
GLDQFLGMNN HHTKPAESNL LRQSSSPAGM FTNLSDQNGY GSMRSLMNYG GEEEDEDRPS  180
NSNGLRRHCS LSSRPLSSLG MLSQIPEIAT NFQYNHWNDP SSFIDNLSSL KRETEDDAKL  240
FNGAQNGESG NRMQLLSHHL SLPKSSDMAS VDKFMQLQDS VPCKVRAKRG CATHPRSIAE  300
RVRRTRISER MRKLQELVPN MDKQTNTSDM LDLAVDYIKD LQRQYKILND NRANCKCKEK  360
KPV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016847m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531630.0AK353163.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411489.10.0transcription factor bHLH130
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLE4MXB60.0E4MXB6_EUTHA; mRNA, clone: RTFL01-22-A04
TrEMBLV4MCM70.0V4MCM7_EUTSA; Uncharacterized protein
STRINGXP_006411489.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]