PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016925m
Common NameEUTSA_v10016925mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 327aa    MW: 36877.8 Da    PI: 9.5227
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016925mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.84.3e-16988275
         trihelix  2 WtkqevlaLiearremeerlr.r.....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
                     Wt +e+l+Liea++ +eer   r     ++  + +W+++ ++++++g+ r+++qC++kw+nl + ykki+e e+ r + s
  Thhalv10016925m  9 WTVSETLVLIEAKKMDEERRVqRsigphSSVTELRWKWIEEYCWRKGCLRNQNQCNDKWDNLMRSYKKIREYERWRVESS 88
                     ************99766655514333334799***************************************999874333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073171IPR017877Myb-like domain
PfamPF138375.0E-128100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MREYRKGNWT VSETLVLIEA KKMDEERRVQ RSIGPHSSVT ELRWKWIEEY CWRKGCLRNQ  60
NQCNDKWDNL MRSYKKIREY ERWRVESSPN TGSSSYSKME KVERKEKNLP SNMLPQIYEA  120
LAELVEKKGL PSSSSSATVA VGNGGSSGGQ ILRMCQHSLG FEAPVMAQPL HQIFPATIVL  180
PLPTQLSLAL SHPPPPKLPP STFQAEPLQP IVDTYPAKRR RTKQRESTIG EERESEDIAV  240
GAALSRSASL IAQVIRESDE RQERSHKEVV RLQERRLEIE ESKAEINRKG MSGVVDAINK  300
LATSIFTLAS SSSSCHNNQN HQGGPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016925m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410730.20.0uncharacterized protein LOC18027116
TrEMBLV4MI010.0V4MI01_EUTSA; Uncharacterized protein
STRINGXP_006410730.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-135Trihelix family protein