PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016974m
Common NameEUTSA_v10016974mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 313aa    MW: 34320.6 Da    PI: 6.8162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016974mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.8e-2947140185
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e+ s +++ +++
  Thhalv10016974m  47 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETDSYWVMRNDV 140
                      8**********************97778888888**********************************************999999**999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.447113IPR017877Myb-like domain
PfamPF138377.1E-1347136No hitNo description
Gene3DG3DSA:1.10.10.605.4E-547112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALEQLGLGV VSAVDGEGNG VTQGGGENSA PSNEGGDDGV KTARLPRWTR QEILVLIQGK  60
RVAENRVRRG RAAGMALGSG QMEPKWASVS SYCRRHGVNR GPVQCRKRWS NLAGDYKKIK  120
EWESQIKEET DSYWVMRNDV RRERKLPGFF DKEVYDIVDG GVVPPAIPPG LALGLAPASA  180
EGLLSDVDRR ELVRSPDKLN SSPKAIEGRL KEKHLEAANP EAGSTSQEER KRKRTSAGEE  240
EVEEEEEGEA TKSMQNQLIQ ILERNGQLLA AQLEVQNSNL KLDREQRKDH GDNLVAVLNK  300
LADAVAKIAD KL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016974m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023321e-148AC002332.3 Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence.
GenBankAY0653641e-148AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
GenBankAY0963891e-148AY096389.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
GenBankCP0026851e-148CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankHQ3223831e-148HQ322383.1 Arabidopsis thaliana trihelix (At2g33550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003747.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-171ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLV4MA060.0V4MA06_EUTSA; Uncharacterized protein
STRINGXP_006410499.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-151Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]