PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016979m
Common NameEUTSA_v10016979mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 311aa    MW: 33680.2 Da    PI: 6.826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016979mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-11528326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C+++++tG Ck+G  CkF+H+
  Thhalv10016979m  5 EKSCPYYMQTGMCKFGVACKFHHP 28
                     667********************8 PP
2zf-CCCH41.13e-13134159227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++Crff+ tGtCkyGd Ck++H++
  Thhalv10016979m 134 DRAECRFFMNTGTCKYGDDCKYSHPK 159
                      689*********************96 PP
3zf-CCCH34.72.9e-11179205127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +f ++G+CkyG++CkF H++
  Thhalv10016979m 179 PGQPACGNFKAYGFCKYGANCKFDHSM 205
                      57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.77230IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5229IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-8428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6530IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4727IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568132160IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-8133159IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-6134161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-7138159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004178206IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6178205IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8180204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4184204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRQGEKSCPY YMQTGMCKFG VACKFHHPHP QPHNGHSTYG MSSFPSVGYP YAGGLTMMSL  60
PPATYGVMTP PQVPQSQAYM PFMVAPSQGL LPPQGWPTYM AGSNPMYNVK TQPDSSSSAS  120
VTVAVTSHHQ NYSDRAECRF FMNTGTCKYG DDCKYSHPKE RMLHSPPNLS NPIALPARPG  180
QPACGNFKAY GFCKYGANCK FDHSMPTANA SPVVTHLRIS SPPSNSDSTT NGNKPAAENH  240
SSEIEKQEDI STQPDKSEVQ DSSQPNHSDS TALSNGKPDA ENPSSETKKE DENPVQPEKS  300
EKQESSDNSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016979m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387440.0AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410430.20.0zinc finger CCCH domain-containing protein 26
SwissprotO487721e-150C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLV4MH400.0V4MH40_EUTSA; Uncharacterized protein
STRINGXP_006410430.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-142zinc finger nuclease 2