PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016994m
Common NameEUTSA_v10016994mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 304aa    MW: 33244.8 Da    PI: 7.9367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016994mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.8e-13195220126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+ C+ +  tG+C++G++C+FaHg
  Thhalv10016994m 195 WKTRVCNKWEITGHCPFGANCHFAHG 220
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-1475111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-676109IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-477104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.26377105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-9133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.13134161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-17188224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-10190225IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131194222IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10195220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTHRRNSGSD AVHVIPTNDP PPENRFPFPG DSSVWANEDD YSRVLTVNTD DTESPSKKTR  60
GVPPSSSSSF SDIGKSFFKT KLCFKFRAGT CPYAANSCHF AHSAEELRRP PPDRQETTAE  120
TRDEFKIPAE SGRLYKGRHC KKFYSGEGCP YGESCTFLHD EALKNRESFV ISLGPHGSGA  180
GDGDNVAQIV RPPNWKTRVC NKWEITGHCP FGANCHFAHG AAELHRFGGG LVEEEGKIGT  240
SATPCTKQTG QADTLTSLVS PGVPPQRSSS AVTQKPNGVR TQRKWKGPDK ISRVYGDWID  300
DIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016994m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202325e-94BT020232.1 Arabidopsis thaliana At2g35430 gene, complete cds.
GenBankBT0205535e-94BT020553.1 Arabidopsis thaliana At2g35430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410700.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-124C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLV4MHX50.0V4MHX5_EUTSA; Uncharacterized protein
STRINGXP_006410700.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-121C3H family protein