PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017032m

Common Name

EUTSA_v10017032mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 290aa MW: 31589.7 Da PI: 8.4672

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017032m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.5e-38	46	105	4	63
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +a+kcprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss Thhalv10017032m 46 EAQKCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105 6789****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	46	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	47	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.05	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDPQQEISNE TLETILVNST KGSNNNNKKM EEEMKKKQGR GELGGEAQKC PRCESPNTKF 60 CYYNNYSLSQ PRYFCKSCRR YWTKGGTLRN VPVGGGCRRN KRSSSSSTAF SKNNNKPISF 120 HNDPLHNPLI TGMPSSFGYD SIDLNLAFAS LHKHSSSQAT PSFGFGGDLS IYGNSTNTHS 180 DVFGNGAIFG GGQNGNFNNG SLCYGFMSGN ENESKNSSLG FSLEGNERKQ ENVNNNNNIS 240 ANQSKVLWGF PWQMTGDSAG VVPEVDPGRE SWNGLASSWN NGLLNTPLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017032m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409879.1	0.0	dof zinc finger protein DOF2.1
Swissprot	Q8LE43	1e-139	DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBL	V4M8D6	0.0	V4M8D6_EUTSA; Uncharacterized protein
STRING	XP_006409879.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-114	Dof family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017032m
Entrez Gene	18028056