PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017111m
Common NameEUTSA_v10017032mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 261aa    MW: 28360.2 Da    PI: 8.6563
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017111mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.2e-381776463
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                     +a+kcprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss
  Thhalv10017111m 17 EAQKCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 76
                     6789****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-231768IPR003851Zinc finger, Dof-type
PfamPF027011.7E-321873IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.051973IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102157IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEEEMKKKQG RGELGGEAQK CPRCESPNTK FCYYNNYSLS QPRYFCKSCR RYWTKGGTLR  60
NVPVGGGCRR NKRSSSSSTA FSKNNNKPIS FHNDPLHNPL ITGMPSSFGY DSIDLNLAFA  120
SLHKHSSSQA TPSFGFGGDL SIYGNSTNTH SDVFGNGAIF GGGQNGNFNN GSLCYGFMSG  180
NENESKNSSL GFSLEGNERK QENVNNNNNI SANQSKVLWG FPWQMTGDSA GVVPEVDPGR  240
ESWNGLASSW NNGLLNTPLV *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017111m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409879.10.0dof zinc finger protein DOF2.1
SwissprotQ8LE431e-124DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLV4M8D60.0V4M8D6_EUTSA; Uncharacterized protein
STRINGXP_006409879.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-105Dof family protein