PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017149m
Common NameEUTSA_v10017149mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 249aa    MW: 27594.1 Da    PI: 4.9088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017149mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1785135255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +g
  Thhalv10017149m  85 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATKG 135
                      69*******.**********44465..**********************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-2884144No hitNo description
SuperFamilySSF541711.5E-2185145IPR016177DNA-binding domain
SMARTSM003809.1E-3585149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2985144IPR001471AP2/ERF domain
PROSITE profilePS5103221.89185143IPR001471AP2/ERF domain
PfamPF008472.2E-1185133IPR001471AP2/ERF domain
PRINTSPR003674.2E-108697IPR001471AP2/ERF domain
PRINTSPR003674.2E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEYSQSTMYS SPSSWSSSQE SFLWNESSIL DQSFDHQSFY PSYNYSDDFF SFESSEMLIK  60
EETQNGDVSN SEEEEKVGFI DEEKSYRGVR KRPWGKFAAE IRDSTRNGIR VWLGTFDKAE  120
EAALAYDQAA FATKGALAVL NFPVEVVRES LKQMDNVNLH DGGSPVMALK RKHSLRNRPR  180
GKKRASSSSS SSSSSTSSNY SSSSSSSSSS SSTSRSNKQS VVKQESGTLV VFEDLGAEYL  240
EQLLMSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2784146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-26821451174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017149m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410255.11e-180ethylene-responsive transcription factor 15
SwissprotQ8VYM01e-123ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLV4MGN11e-178V4MGN1_EUTSA; Uncharacterized protein
STRINGXP_006410255.11e-179(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-91ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]