PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017152m

Common Name

EUTSA_v10017152mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NAC

Protein Properties

Length: 248aa MW: 28197 Da PI: 9.6612

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017152m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.3	8.9e-51	14	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+di+k++PwdLp ++e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ Thhalv10017152m 14 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPEIDICKADPWDLPGD---CDSEKYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGG 103 79**************************.99***********44...46799******************************87 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvg+kktLvfykg+ p+g++t+Wv+heyrl Thhalv10017152m 104 --KKLVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 135 ..899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-59	9	153	IPR003441	NAC domain
PROSITE profile	PS51005	57.496	14	153	IPR003441	NAC domain
Pfam	PF02365	4.4E-27	15	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEKHSSIKNR GLRLPPGFRF HPTDEELVVQ YLRRKVTGLP LPASVIPEID ICKADPWDLP 60 GDCDSEKYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGGKKLVGMK KTLVFYKGKP 120 PNGTRTNWVL HEYRLVDSYG ESKNWVLCRV FLKKRSNNSN KRKEDERERE SEDKKSTCPI 180 FYDFMRKDRK RRSCCDLNLT PTCCSCSSSS SSASSSVCSS ALTQTSSNDS DNHEVISCRK 240 NKFCLFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	12	156	15	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	12	156	15	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	12	156	15	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	12	156	15	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	12	156	18	171	NAC domain-containing protein 19
3swm_B	2e-52	12	156	18	171	NAC domain-containing protein 19
3swm_C	2e-52	12	156	18	171	NAC domain-containing protein 19
3swm_D	2e-52	12	156	18	171	NAC domain-containing protein 19
3swp_A	2e-52	12	156	18	171	NAC domain-containing protein 19
3swp_B	2e-52	12	156	18	171	NAC domain-containing protein 19
3swp_C	2e-52	12	156	18	171	NAC domain-containing protein 19
3swp_D	2e-52	12	156	18	171	NAC domain-containing protein 19
4dul_A	2e-52	12	156	15	168	NAC domain-containing protein 19
4dul_B	2e-52	12	156	15	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017152m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975668	1e-145	KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410492.1	0.0	NAC domain-containing protein 41
Swissprot	O22798	1e-118	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	V4LN07	0.0	V4LN07_EUTSA; Uncharacterized protein
STRING	XP_006410492.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-111	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Thhalv10017152m
Entrez Gene	18027586

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]