PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017156m
Common NameEUTSA_v10017156mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 247aa    MW: 28657.6 Da    PI: 6.965
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017156mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.74.1e-3238143199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k ltpsdv+k++rlv+pk++ae++        +   e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++
  Thhalv10017156m  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHR 130
                      99*****************************99644.46888*************************************************887 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                       ++++++++++r+
  Thhalv10017156m 131 ADGRRFFIGWRRR 143
                      799999*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-4132151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-3135144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-2737134No hitNo description
PfamPF023621.1E-2938143IPR003340B3 DNA binding domain
PROSITE profilePS5086313.74738143IPR003340B3 DNA binding domain
SMARTSM010192.2E-2438144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSINQYSSDF HYHSLMWQQQ QQQHHHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA  120
GDVVLFHRHR ADGRRFFIGW RRRGDSSSSS ESYRHLQSNA SLHYPHAGAQ AGESQRGNSK  180
TLRLFGVNME CQLDSDWSEP STPDGFTTCP TSHDQFHFYP QQHYPPPYFM DISFTGDVHQ  240
TRSTQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48311431113B3 domain-containing transcription factor NGA1
5os9_B2e-48311431113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017156m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410779.10.0B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-148Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLV4MAS30.0V4MAS3_EUTSA; Uncharacterized protein
STRINGXP_006410779.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-122B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]