PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017165m
Common NameEUTSA_v10017165mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 245aa    MW: 26688.2 Da    PI: 4.4704
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017165mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.87.9e-43611601100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l
  Thhalv10017165m  61 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQL 154
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++ e
  Thhalv10017165m 155 AKTQVE 160
                      *99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.22860161IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-4261158IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLKMEINGGT SAATPTASDV AIPVAAVSET TTPVTSPSPT SSPPPPLSPQ QPPQPPVVLS  60
PCAACKILRR RCADKCVLAP YFPPTDPAKF TIAHRVFGAS NIIKFLQELP ESQRTDAVNS  120
MVYEAGARMR DPVYGCAGAI YHLQRQVSEL QAQLAKTQVE LVSMQLQRSD LLALLYKMEQ  180
TKLLAQEQGQ QNMSFESSFE SGDEFISSPD EVVMSSFGFL EEDNNNNNNN NNNPLLSWWD  240
PLET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-40531623112LOB family transfactor Ramosa2.1
5ly0_B1e-40531623112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017165m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738400.0AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409877.10.0LOB domain-containing protein 11
SwissprotQ9SK081e-122LBD11_ARATH; LOB domain-containing protein 11
TrEMBLV4LL881e-180V4LL88_EUTSA; Uncharacterized protein
STRINGXP_006409877.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-101LOB domain-containing protein 11