PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017170m
Common NameEUTSA_v10017169mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family DBB
Protein Properties Length: 242aa    MW: 27038.4 Da    PI: 4.8349
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017170mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-07443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      C+ +e+ +++l C  ++  lC++C +e H        H+
  Thhalv10017170m  4 QCDVCEKAPATLICCADEAALCAKCDVEVHAAnklaskHQ 43
                     7*****************************6556666665 PP
2zf-B_box28.63e-095594437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     + C+ + ek + +fC +++ llC+dC +++H +      H
  Thhalv10017170m 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHASntrsanH 94
                     68*****************************765666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.371147IPR000315B-box-type zinc finger
CDDcd000218.98E-7347No hitNo description
SMARTSM003361.8E-9447IPR000315B-box-type zinc finger
PfamPF006438.8E-6444IPR000315B-box-type zinc finger
SMARTSM003365.2E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3435299IPR000315B-box-type zinc finger
CDDcd000216.93E-75598No hitNo description
PfamPF006432.1E-65595IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLNSL STKFPPCDIC  60
LEKAAFIFCV EDRALLCRDC DEATHASNTR SANHQRFLAT GIRVALSSTS CSKEVETNHF  120
DPSNQQNAKQ TLPKPLIQQS AAPSPPWDGD EFFRYSDLEC SNKKEQLDLG ELDWLAEMGF  180
LEDQPDQETL PVAEVPELSF SHLAHVHSYN RPMKSNVSNK KPRLEVRYDD EEEHFLVPDL  240
G*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017170m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529610.0AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410271.11e-179B-box zinc finger protein 25 isoform X2
SwissprotQ9SID11e-153BBX25_ARATH; B-box zinc finger protein 25
TrEMBLE4MWR41e-178E4MWR4_EUTHA; mRNA, clone: RTFL01-09-E05
TrEMBLV4M6391e-178V4M639_EUTSA; Uncharacterized protein
STRINGXP_006410272.11e-177(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.11e-156salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]