PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017235m
Common NameEUTSA_v10017235mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 211aa    MW: 23351.9 Da    PI: 8.0158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017235mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.91.9e-2169118356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g+
  Thhalv10017235m  69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 118
                      9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3868131IPR001471AP2/ERF domain
CDDcd000182.46E-3668127No hitNo description
PROSITE profilePS5103224.94868125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-3468126IPR001471AP2/ERF domain
PfamPF008471.2E-1568118IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2368126IPR016177DNA-binding domain
PRINTSPR003672.9E-126980IPR001471AP2/ERF domain
PRINTSPR003672.9E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MHSGKRPLSP ESMAGKREEK EDLCCCSTLS ESDVSAFVSE LTNQPTQLSM DSSPSPTPQE  60
QSNSRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEEAALAYDK AAFEFRGHKA  120
KLNFPEHILT NSPSTDTSHD RIIVTPPPPI APDILPDQYC QFHSGNSQSG ANLSMTTTSH  180
SSSSLNHRGQ STKMEDGENV KNISIHKRRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2667125160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017235m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364561e-145AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
GenBankBT0002361e-145BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410514.11e-158ethylene-responsive transcription factor ERF112
SwissprotP930071e-94EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLV4MA181e-156V4MA18_EUTSA; Uncharacterized protein
STRINGXP_006410514.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-83ERF family protein