PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017299m

Common Name

EUTSA_v10017299mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 181aa MW: 20359.1 Da PI: 5.5517

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017299m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.4e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C +Ck+lrrkC+++Cv+apyf++e+ +++fa++h++FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a+ Thhalv10017299m 7 PCGGCKFLRRKCVEGCVFAPYFCNEEgSSNFAAIHRVFGASNFSKLISHLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQ 100 7*********************9979**************************************************************** PP DUF260 94 lallkee 100 ++ll+ee Thhalv10017299m 101 VVLLREE 107 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.894	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-35	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCN EEGSSNFAAI HRVFGASNFS KLISHLPVHD 60 RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEACR KFPQENCMEE 120 EKVLAQDMPQ DLHSWFHQLV SNSNLNQMSD IASTSMDKNE SFCSSNESLY YQEVMFPWPV 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017299m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	1e-145	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410263.1	1e-133	LOB domain-containing protein 14
Swissprot	Q9SJW5	1e-102	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	V4NXR6	1e-132	V4NXR6_EUTSA; Uncharacterized protein
STRING	XP_006410263.1	1e-133	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	5e-87	LOB domain-containing protein 14

Link Out ? help Back to Top
Phytozome	Thhalv10017299m
Entrez Gene	18027156

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]