PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017320m

Common Name

EUTSA_v10017320mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

YABBY

Protein Properties

Length: 171aa MW: 19110.9 Da PI: 9.8908

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017320m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	191.5	4.1e-59	5	159	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ a q l+ + ++ + ++e+ +s +++ ++ s++ Thhalv10017320m 5 ATATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMVAALQSLSRPNF--------QATNYAMSEHGSSSRGHTKIPSRISTR 90 5789****************************************9988888877664........222222322222222222222222222 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + e++ v r + Pekrqrv sayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Thhalv10017320m 91 ----TITEQRVVNRLLYCLSAPEKRQRVRSAYNQFIKEEIQRIKANNPNISHREAFSTAAKNWAHFPHIHFGL 159 ....34678999999999***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-65	7	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-7	104	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.5E-4	113	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MANSATATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MVAALQSLSR 60 PNFQATNYAM SEHGSSSRGH TKIPSRISTR TITEQRVVNR LLYCLSAPEK RQRVRSAYNQ 120 FIKEEIQRIK ANNPNISHRE AFSTAAKNWA HFPHIHFGLM LESNKQAKIA *

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017320m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353291	1e-167	AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409726.1	1e-125	axial regulator YABBY 5 isoform X1
Refseq	XP_024004271.1	1e-125	axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	1e-109	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	V4M4M6	1e-123	V4M4M6_EUTSA; Uncharacterized protein
STRING	XP_006409726.1	1e-124	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-111	YABBY family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017320m
Entrez Gene	18027619

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]