PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017337m

Common Name

EUTSA_v10017320mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

YABBY

Protein Properties

Length: 165aa MW: 18444.1 Da PI: 10.2012

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017337m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	190.1	1.1e-58	5	153	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ a q l+ + ++++ ++++ s+s+ ++ Thhalv10017337m 5 ATATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMVAALQSLSRPNF-----------------QATNYAMSEHGSSSRGHT 81 5789**************************************999887777665553.................233333333333333333 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + s+ +++ ++++ v+rPPekrqrv sayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Thhalv10017337m 82 K-IPSRISTRTITEQRVVNRPPEKRQRVRSAYNQFIKEEIQRIKANNPNISHREAFSTAAKNWAHFPHIHFGL 153 3.2356667777777789***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-67	7	153	IPR006780	YABBY protein
SuperFamily	SSF47095	6.94E-8	97	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-4	100	147	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MANSATATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MVAALQSLSR 60 PNFQATNYAM SEHGSSSRGH TKIPSRISTR TITEQRVVNR PPEKRQRVRS AYNQFIKEEI 120 QRIKANNPNI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKIA*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017337m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353291	0.0	AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409724.1	1e-120	axial regulator YABBY 5 isoform X2
Refseq	XP_006409725.1	1e-120	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	1e-113	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	E4MXP4	1e-119	E4MXP4_EUTHA; mRNA, clone: RTFL01-24-G08
TrEMBL	V4MF80	1e-119	V4MF80_EUTSA; Uncharacterized protein
STRING	XP_006409726.1	1e-116	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-115	YABBY family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017337m
Entrez Gene	18027619

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]