PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017411m

Common Name

EUTSA_v10017320mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

YABBY

Protein Properties

Length: 132aa MW: 14347.3 Da PI: 9.2141

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017411m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	81.1	3.4e-25	5	66	4	66
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ a q l+ + + + Thhalv10017411m 5 ATATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMVAALQSLSRPNF-QAT 66 5789*******************************************999988877664.222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-27	7	84	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MANSATATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MVAALQSLSR 60 PNFQATNYAM SEHGSSSRGH TKIPSRISTR TITEQRVVNR RKPLSPSRKA AASTFCLQSI 120 HKRGNSEDQG E*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017411m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353291	0.0	AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409724.1	9e-69	axial regulator YABBY 5 isoform X2
Refseq	XP_006409725.1	9e-69	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	2e-63	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	V4NWF1	1e-92	V4NWF1_EUTSA; Uncharacterized protein
STRING	XP_006409726.1	8e-68	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-66	YABBY family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017411m
Entrez Gene	18027619

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]