PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017421m
Common NameEUTSA_v10017421mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 127aa    MW: 14151.4 Da    PI: 5.876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017421mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.3e-0614541055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  Thhalv10017421m 14 QERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 54
                     67889999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.69453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-51059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-101163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-121268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-61658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLMMLELCCS LVKQERKDKV GERISALQQL VSPYGKTDTA SVLLEAMQYI QFLQEQVKVL  60
SAPYLQTTPI TTQEELEENS LRSRGLCLVP MEYTLGVAQT NGADIWAHVK TPTTPAFNLK  120
SNSPFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017421m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760415e-83AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
GenBankBT0109115e-83BT010911.1 Arabidopsis thaliana At2g31730 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003772.11e-79transcription factor bHLH153 isoform X1
SwissprotQ7XJU25e-64BH153_ARATH; Transcription factor bHLH153
TrEMBLV4NXU62e-88V4NXU6_EUTSA; Uncharacterized protein
STRINGXP_006410303.13e-89(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-66bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]