PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017496m

Common Name

EUTSA_v10017496mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8123.87 Da PI: 10.7983

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017496m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.6	1.2e-42	8	76	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++a++eakGlnPGlivllvvggll++fl++ny++y+yaqk+lPP+kkkP+skkklkreklkqGv+vPGe Thhalv10017496m 8 GKAAAEAKGLNPGLIVLLVVGGLLVTFLIANYVMYMYAQKTLPPKKKKPISKKKLKREKLKQGVPVPGE 76 57899***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	9.5E-39	12	76	IPR006779	DNA binding protein S1FA
ProDom	PD019013	0.003	33	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MSSEGSAGKA AAEAKGLNPG LIVLLVVGGL LVTFLIANYV MYMYAQKTLP PKKKKPISKK 60 KLKREKLKQG VPVPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017496m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372892	3e-83	AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBank	AY085439	3e-83	AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.
GenBank	BT002669	3e-83	BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410892.1	7e-46	DNA-binding protein S1FA2
Swissprot	Q42337	2e-28	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	V4LP38	2e-44	V4LP38_EUTSA; Uncharacterized protein
STRING	XP_006410892.1	3e-45	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	5e-07	S1FA-like DNA-binding protein

Link Out ? help Back to Top
Phytozome	Thhalv10017496m
Entrez Gene	18026797