PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017577m
Common NameEUTSA_v10017577mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 221aa    MW: 25599.4 Da    PI: 4.4129
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017577mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.57.7e-08139540112
              NAM  40 ykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkgel....vglkktLvfykgr 112
                      ++ ePw L++ v++    e++wy+F++r k    gk+++r+      ++ g+W++  ++ke+++kk+++     g  + Lv+ k r
  Thhalv10017577m  13 CSKEPWLLDH-VNNdlfYENQWYYFVPRPKIG--GKKPKRTvpgrgeIEGGTWRSVTSKKEIVNKKNQEgglhSGAHDNLVLCKIR 95 
                      7899****83.333345678*******99854..445555434444488***************8555544447777778777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.1081136IPR003441NAC domain
SuperFamilySSF1019411.29E-81396IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MYKDEPWLLF FFCSKEPWLL DHVNNDLFYE NQWYYFVPRP KIGGKKPKRT VPGRGEIEGG  60
TWRSVTSKKE IVNKKNQEGG LHSGAHDNLV LCKIRYNTDK KLKPEVGDQA PRLRNNVQVR  120
EDEEVDLTGF ANVLEDMLVE GEEHGDVTQQ QQQQDPPIFP PLHQGHDSGS ETPMMTQSND  180
NNNMTMWTQS NDNNNMNQWD DFDFDGLENL MLDVDELIAV E
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017577m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411326.11e-108NAC domain-containing protein 6
SwissprotQ9LR749e-22NAC6_ARATH; NAC domain-containing protein 6
TrEMBLV4LQA21e-163V4LQA2_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006411317.11e-164(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-19NAC domain containing protein 6