PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017787m
Common NameEUTSA_v10017787mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13516.9 Da    PI: 10.9199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017787mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.68e-141359551
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +r  +f+k r  + K A  L++L daevavi+fs++gkl+ ++s
  Thhalv10017787m 13 QANRRPASFAKMRSRLVKNARQLCTLSDAEVAVIVFSKSGKLFQFAS 59
                     667999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.554161IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-15323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-20380IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131457IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MIRRKLVIKR LAQANRRPAS FAKMRSRLVK NARQLCTLSD AEVAVIVFSK SGKLFQFAST  60
SMTQMLMRYQ NYQHSSQAPL ITSKAEVSHS SAMLKSYCFF IFIHVYCFYG YSSLIRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A1e-14378277MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B1e-14378277MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017787m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012192.11e-26agamous-like MADS-box protein AGL15 isoform X1
RefseqXP_024012193.11e-26agamous-like MADS-box protein AGL15 isoform X2
RefseqXP_024012194.11e-26agamous-like MADS-box protein AGL15 isoform X3
SwissprotQ392959e-25AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLV4MFL66e-80V4MFL6_EUTSA; Uncharacterized protein
STRINGXP_006409885.11e-80(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-25AGAMOUS-like 15