PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017795m
Common NameEUTSA_v10017795mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 252aa    MW: 29183.5 Da    PI: 6.1451
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017795mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.5e-34461372102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y+++ed++++e+isw+ +g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF+++ F+kg++el++
  Thhalv10017795m  46 FLVKTYKVVEDPTTDEVISWNGDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGQRELMC 130
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  Thhalv10017795m 131 NIRRRKN 137
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-5542135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.3E-3643135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.84E-3343135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEDAADHHHL RCNDNINDVE KLPLEFMTGK PTSSVELQPP AIPPPFLVKT YKVVEDPTTD  60
EVISWNGDGT GFVVWQPAEF ARDLLPTLFK HCNFSSFVRQ LNTYGFRKVT TIRWEFSNEM  120
FRKGQRELMC NIRRRKNWSH SHSHQKSHHQ VVPTTTTVKP EDHHQRLGID HHHEDQRSSS  180
TSSSFIYSAL LDENKCLKNE NEFLSSELGN TKKKCKQLME LVDRYRGEDE TDDDDNNEED  240
EGLKLFGVKL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-224013514120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017795m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411432.10.0heat stress transcription factor B-3
SwissprotO222301e-136HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLV4LQK30.0V4LQK3_EUTSA; Uncharacterized protein
STRINGXP_006411432.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-126heat shock transcription factor B3