PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017865m
Common NameEUTSA_v10017865mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YB
Protein Properties Length: 103aa    MW: 11529.2 Da    PI: 4.5035
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017865mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.53.8e-141096788
            NF-YB  7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                     +lP+a v r++k  l +     +  i k+a     e +  fi +++s a+d c+  +r+ti++dd++ al ++ f +++eplk+ l+
  Thhalv10017865m 10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALVAFSESARIFIHYLSSTANDFCKDSRRQTIKADDVFKALEEMDFGEFLEPLKASLE 96
                     69**********999652222356899********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.9E-101079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.8E-271097IPR009072Histone-fold
SuperFamilySSF471134.37E-231198IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MESEKVVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL VAFSESARIF IHYLSSTAND  60
FCKDSRRQTI KADDVFKALE EMDFGEFLEP LKASLEGCLQ VS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017865m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-103BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003731.12e-65DNA polymerase epsilon subunit 3
TrEMBLV4LKW84e-67V4LKW8_EUTSA; Uncharacterized protein
STRINGXP_006409732.16e-68(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-61nuclear factor Y, subunit B11