PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017870m
Common NameEUTSA_v10017870mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 212aa    MW: 23998.2 Da    PI: 9.6188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017870mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-054870123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Thhalv10017870m 48 YTCSFCRRDFKSAQALGGHMNVH 70
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-64574No hitNo description
Gene3DG3DSA:3.30.160.607.2E-44673IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0944875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKRTHLASFS SRNKTQEDVE DTNGDNRISM NHYKNYEAGL IPWPPKNYTC SFCRRDFKSA  60
QALGGHMNVH REDRAKLRQI PSWIFEPHHQ IPISNPNPKL NSSSSSTPPD HLEPSLAIQR  120
YKTTPFSSTR FGLLENTTSY GGLMMEREKS KSNVCGREIK KSGMVACHTP RSEISRGDMM  180
NKRDEVTGLE LGMGLINTKQ VLDLELRLGY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-124370229superman protein
2l1o_A4e-124370229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017870m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411499.11e-159zinc finger protein 11
SwissprotQ9SLB81e-114ZFP11_ARATH; Zinc finger protein 11
TrEMBLV4MCN61e-158V4MCN6_EUTSA; Uncharacterized protein
STRINGXP_006411499.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-109zinc finger protein 11