PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017903m

Common Name

EUTSA_v10017903mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 200aa MW: 22594.1 Da PI: 6.36

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017903m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.3e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++h++FGasn +k+l++lp e+r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++ Thhalv10017903m 7 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHQVFGASNASKVLSNLPMEDRYEAAITIYYEAQARLQDPIYGCVSHIFSLQQQVVNLQTQ 100 7***********************89************************************************************** PP DUF260 94 lallkee 100 l+ lk++ Thhalv10017903m 101 LEILKQQ 107 *9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.158	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KVLSNLPMED 60 RYEAAITIYY EAQARLQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQAAQ SMMATDFPSI 120 ENPNYHRDTK PTHLQESQDL YRPHNNHHQD GSMETERYSD LNYIMTSYFE LEQHLNTFNP 180 HDHGGNDILS SSFGYISYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-35	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	7e-35	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017903m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473848	1e-152	AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411501.1	1e-150	LOB domain-containing protein 17
Swissprot	Q9SLB6	1e-98	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	V4M9C7	1e-149	V4M9C7_EUTSA; Uncharacterized protein
STRING	XP_006411501.1	1e-149	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-90	LBD family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017903m
Entrez Gene	18027716

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]