PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017908m
Common NameEUTSA_v10017908mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 254aa    MW: 28865.7 Da    PI: 8.6026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017908mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-0556871854
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++f+ L+ l+P++      K + ++iL+  ++YI +L
  Thhalv10017908m 56 ERFHALKMLIPSP-----SKGDRVSILQNGIDYIIEL 87
                     79**********9.....799*************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2263887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.83E-941105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00774693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-74696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKFASFFTDH RRSKTHNAQL DSGIIDFSQE IRRGGRGKQS YKSFTTEREK GSHLIERFHA  60
LKMLIPSPSK GDRVSILQNG IDYIIELRRL VSELKYLVER KRCSGRHINN NALDNNNNNN  120
SNDHLNDDDG NENMEKKPES DVIDQCSSHN SLRCSWLQRK SEVTEVDVMI LDDEATIKVV  180
QKKKINCLLV VSKVLDQLHL DLLYVAGGQI GEHYSFLLKT KIHEGSTISA SAIANRVIEA  240
VDKHYMVALP NKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017908m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410253.20.0transcription factor bHLH91
SwissprotQ8GX461e-115BH091_ARATH; Transcription factor bHLH91
TrEMBLV4NXR00.0V4NXR0_EUTSA; Uncharacterized protein
STRINGXP_006410253.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-118bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]