PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017929m
Common NameEUTSA_v10017929mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 196aa    MW: 21459.2 Da    PI: 7.7134
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017929mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.55.8e-3534136789
              TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 
                       ++++hTkv+gR+RRvR++a+ aar+F+L++eLG+ +d++tieWLl qa+p+i+++tg++ ++++     sss+++++s +             
  Thhalv10017929m  34 ASKDRHTKVNGRGRRVRMPALAAARIFQLTRELGHRSDGETIEWLLSQAEPSIIAATGSGINPSEPI---SSSVAVDSSPQMmfamvapqtqtq 124
                      589********************************************************88888444...333333321112222222222222 PP

              TCP  89 ...........k 89 
                                  
  Thhalv10017929m 125 tqmqtpncrldL 136
                      222233333440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-3034126IPR005333Transcription factor, TCP
PROSITE profilePS5136926.7613589IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVFQKLTTTE SSPNALAPES RPQSQIAVSK PSAASKDRHT KVNGRGRRVR MPALAAARIF  60
QLTRELGHRS DGETIEWLLS QAEPSIIAAT GSGINPSEPI SSSVAVDSSP QMMFAMVAPQ  120
TQTQTQMQTP NCRLDLCQPI GIQYPVNGYS HMPFTAMLLQ PMATATAAES DVEIAAEERR  180
QREAFEDRRN HHHHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017929m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410877.21e-144transcription factor TCP11
SwissprotQ9SJK76e-67TCP11_ARATH; Transcription factor TCP11
TrEMBLV4LP211e-142V4LP21_EUTSA; Uncharacterized protein
STRINGXP_006410877.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-64TCP family protein