PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017944m
Common NameEUTSA_v10017944mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 203aa    MW: 22575.3 Da    PI: 10.5054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017944mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-1264110354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+ +ErrRR riN  f++Lr++lP++      K +Ka +Le+ v+Y ++L
  Thhalv10017944m  64 KKHSDAERRRRLRINCQFATLRTVLPNL-----VKQNKAYVLEEIVKYFNEL 110
                      68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1153116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.64961110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-964110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-864115No hitNo description
Gene3DG3DSA:4.10.280.105.3E-1265114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-967116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.3E-4140202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MCCVLTQLEQ WGRPISLCYN PTTYTTTMGR NFFTGATTSS KLFSSGFSAA KPKSKIGSKE  60
VAAKKHSDAE RRRRLRINCQ FATLRTVLPN LVKQNKAYVL EEIVKYFNEL KKVVKDIPTT  120
PALEDNLRLS HHCNNKDVAR VVFSCSDREG LMSEVAESMK AAKAKAVRAE IMTVGGRTKC  180
ALFVQGVNGN EGLVRLKKSL KPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017944m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775871e-173AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411819.11e-117transcription factor bHLH131
SwissprotP0CB251e-113BH131_ARATH; Transcription factor bHLH131
TrEMBLV4M8651e-149V4M865_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006411031.11e-150(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-107bHLH family protein