PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10018053m

Common Name

EUTSA_v10018053mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

CAMTA

Protein Properties

Length: 1052aa MW: 117602 Da PI: 6.3857

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018053m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.2	7.4e-54	37	152	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++e ++rwlk+ e++ iL+n+e+++lt++++++p+sg+l+L+n++++++frkDG++wk+kkdg+++ E+he+LKvg+ e+l+cyYah+e++ptf Thhalv10018053m 37 YQEaQARWLKPPEVHFILQNHERYQLTHKAPQKPTSGNLFLFNKRVLKFFRKDGHQWKRKKDGRAIAEAHERLKVGNAEALNCYYAHAEQDPTF 130 566699************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L+ e+e+ivlvhy++ Thhalv10018053m 131 QRRIYWMLDPEYEHIVLVHYRD 152 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.173	33	159	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.7E-76	36	154	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.8E-47	39	152	IPR005559	CG-1 DNA-binding domain
CDD	cd00102	2.17E-7	494	579	No hit	No description
SuperFamily	SSF81296	2.94E-17	494	578	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	3.5E-9	494	581	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.4E-10	494	577	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.1E-13	673	772	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.424	680	772	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.22E-14	681	774	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.91E-12	685	772	No hit	No description
Pfam	PF12796	4.2E-6	701	773	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.446	713	745	IPR002110	Ankyrin repeat
SMART	SM00015	17	831	853	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	832	860	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	3.72E-11	832	939	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.51	887	909	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.627	888	917	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0046	889	908	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.4E-5	910	932	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.865	911	935	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	913	932	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence Send to blast
MTRSKSQKLA GAVRSLLNEI RIKEEQVQIE YNIKTLYQEA QARWLKPPEV HFILQNHERY 60 QLTHKAPQKP TSGNLFLFNK RVLKFFRKDG HQWKRKKDGR AIAEAHERLK VGNAEALNCY 120 YAHAEQDPTF QRRIYWMLDP EYEHIVLVHY RDISEGKEGK QTSGHMLQFS PNPATFFSSP 180 SSIATQNASY SHYIGDSTDI HQQHSSTSPG IAEVNSDVVF KSNGVETPEG SGSSYEFENR 240 QAIKRLEEQL SLGDDNVDTV DPLNVQNESL DSLLYLDIDH LAQPASVHQR PENNKLERSY 300 GGYVGAQYNA NAIDSLYTQN ESLDSLLSLE FSRDIDQFAQ PASVNQRPEN NRLERCYGGY 360 IGADYHSNNL MLVKNDSGGK GGSGDQESES WKDVLKACEA STALNSEGST PSSAKGLLSA 420 MQEDSKWSYN NQGDPSTSLL PQELASFKHP ACYPELGAPE NNAKHCRMMD VEGKIGLPLN 480 QEMRQTVAHK QKFTIHDISP EWGYANETTK VIIIGSFLCD PTESTWSCMF GSDEVPFEII 540 KEGVIRCQAP PRGPGKVKLC ITSGDRLSCS QTREFEYRDK PDTSCPRRSP EELSLLVRFV 600 QTLLSDRKSN SEPTVDKLLK KLKADDDQWC HVMETTLDGT AISSSTVDWL LQELLKDKLD 660 AWLSSRSQDQ DQTSCSFSKQ EQGIIHMVAG LGFEWALYPI LGHGVSVDFR DINGWSSLHW 720 AARFGSEKMV AALIASGASA GAVTDPTAQD PAGKTAASIA ASYGHKGLAG YLSEVALTNH 780 LSSLTLEESE TFKDSAQEQA EITVNSISER STPPGNEDPH SLKDTLAAVR NAAQAAARIQ 840 AAFRAHSFRK RQQREAAMAA CFQEYGIYAD IEGISAMSKL AFGNARNYHS AALSIQKKYR 900 GYKGRKEFLE LRQKVVKIQA HVRGYQIRKH YKVICWAVGV LDKIVLRWRR KGAGLRGFRQ 960 DVEASEDSED EDILKVFRKQ KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL 1020 GKTETLGTVD DDDDALFDIA DMEYDNLFAL P*

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence Send to blast

MTRSKSQKLA GAVRSLLNEI RIKEEQVQIE YNIKTLYQEA QARWLKPPEV HFILQNHERY  60
QLTHKAPQKP TSGNLFLFNK RVLKFFRKDG HQWKRKKDGR AIAEAHERLK VGNAEALNCY  120
YAHAEQDPTF QRRIYWMLDP EYEHIVLVHY RDISEGKEGK QTSGHMLQFS PNPATFFSSP  180
SSIATQNASY SHYIGDSTDI HQQHSSTSPG IAEVNSDVVF KSNGVETPEG SGSSYEFENR  240
QAIKRLEEQL SLGDDNVDTV DPLNVQNESL DSLLYLDIDH LAQPASVHQR PENNKLERSY  300
GGYVGAQYNA NAIDSLYTQN ESLDSLLSLE FSRDIDQFAQ PASVNQRPEN NRLERCYGGY  360
IGADYHSNNL MLVKNDSGGK GGSGDQESES WKDVLKACEA STALNSEGST PSSAKGLLSA  420
MQEDSKWSYN NQGDPSTSLL PQELASFKHP ACYPELGAPE NNAKHCRMMD VEGKIGLPLN  480
QEMRQTVAHK QKFTIHDISP EWGYANETTK VIIIGSFLCD PTESTWSCMF GSDEVPFEII  540
KEGVIRCQAP PRGPGKVKLC ITSGDRLSCS QTREFEYRDK PDTSCPRRSP EELSLLVRFV  600
QTLLSDRKSN SEPTVDKLLK KLKADDDQWC HVMETTLDGT AISSSTVDWL LQELLKDKLD  660
AWLSSRSQDQ DQTSCSFSKQ EQGIIHMVAG LGFEWALYPI LGHGVSVDFR DINGWSSLHW  720
AARFGSEKMV AALIASGASA GAVTDPTAQD PAGKTAASIA ASYGHKGLAG YLSEVALTNH  780
LSSLTLEESE TFKDSAQEQA EITVNSISER STPPGNEDPH SLKDTLAAVR NAAQAAARIQ  840
AAFRAHSFRK RQQREAAMAA CFQEYGIYAD IEGISAMSKL AFGNARNYHS AALSIQKKYR  900
GYKGRKEFLE LRQKVVKIQA HVRGYQIRKH YKVICWAVGV LDKIVLRWRR KGAGLRGFRQ  960
DVEASEDSED EDILKVFRKQ KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL  1020
GKTETLGTVD DDDDALFDIA DMEYDNLFAL P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018053m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024013774.1	0.0	calmodulin-binding transcription activator 4 isoform X2
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	V4JTE5	0.0	V4JTE5_EUTSA; Uncharacterized protein
STRING	XP_006391294.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Thhalv10018053m
Entrez Gene	18008635

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]