PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10018210m

Common Name

EUTSA_v10018210mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 699aa MW: 79886.4 Da PI: 6.1888

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018210m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.7e-22	97	180	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l HnH++ Thhalv10018210m 97 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----TRRKETRTGCQAMIRLRLIDFDRWKVDEVKLLHNHSFD 180 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-19	97	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-26	296	389	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.914	579	618	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-6	590	615	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-5	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MIGDSVYSPP DQSSNLCITM EERSQCSEHA EDLDPTDLEN DLDLDNDCRG LLEIASNRET 60 PFAADCESNE ESQSQPKCLM PPATGMEFES YDDAYSYYNS YARELGFAIR VKSSWTKRNS 120 KEKRGAVLCC NCEGFKMVKE ANTRRKETRT GCQAMIRLRL IDFDRWKVDE VKLLHNHSFD 180 PERAHNSKSH KKTSTKRKPE PPVDVQVRTI KLYKTPAIDT PNSSGETSHR NHDHLHCSRR 240 LEIRGAFSAL QDFFFRIQLT NPNFLYLMDL GDDGSLRNVF WIDPRARAAY SHFADVVVFD 300 TTCLSDTYEL PLVAFVGINH HGDSILLGCG LVADQSYETY VWLFRAWLTC MLGRPPQTFI 360 TEQCKAMQSA VSEVFPRAHH RLSLTHVLQS IFRSVVGLQD SEAFRLALNR VVYSFLKVEE 420 FEVAWEEMIL RFGLTNHETI QRLFQDREQW APVYLKDTFL AGELIFRMGN AAAPFIFSGY 480 VHRGTSLTEF LQGYESFLDT NYTSEALRDS ESSKLIPELK TAHPYESQMA KVFTKEIFKR 540 FQEEVSAMSL CFGVTQVHSN GPASSYVVKE RDGEKVREFE VIYETSAAAQ VRCFCVCGGF 600 SFNGYLCRHV LLLLSQNGLE EVPSQYILQR WRKDVNRLYV ADFGSGSVDI INPVQWCEHL 660 HRRAMQVVEQ GLRSKEHCAV ALEAFKESVN KVNLLTTE*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MIGDSVYSPP DQSSNLCITM EERSQCSEHA EDLDPTDLEN DLDLDNDCRG LLEIASNRET  60
PFAADCESNE ESQSQPKCLM PPATGMEFES YDDAYSYYNS YARELGFAIR VKSSWTKRNS  120
KEKRGAVLCC NCEGFKMVKE ANTRRKETRT GCQAMIRLRL IDFDRWKVDE VKLLHNHSFD  180
PERAHNSKSH KKTSTKRKPE PPVDVQVRTI KLYKTPAIDT PNSSGETSHR NHDHLHCSRR  240
LEIRGAFSAL QDFFFRIQLT NPNFLYLMDL GDDGSLRNVF WIDPRARAAY SHFADVVVFD  300
TTCLSDTYEL PLVAFVGINH HGDSILLGCG LVADQSYETY VWLFRAWLTC MLGRPPQTFI  360
TEQCKAMQSA VSEVFPRAHH RLSLTHVLQS IFRSVVGLQD SEAFRLALNR VVYSFLKVEE  420
FEVAWEEMIL RFGLTNHETI QRLFQDREQW APVYLKDTFL AGELIFRMGN AAAPFIFSGY  480
VHRGTSLTEF LQGYESFLDT NYTSEALRDS ESSKLIPELK TAHPYESQMA KVFTKEIFKR  540
FQEEVSAMSL CFGVTQVHSN GPASSYVVKE RDGEKVREFE VIYETSAAAQ VRCFCVCGGF  600
SFNGYLCRHV LLLLSQNGLE EVPSQYILQR WRKDVNRLYV ADFGSGSVDI INPVQWCEHL  660
HRRAMQVVEQ GLRSKEHCAV ALEAFKESVN KVNLLTTE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018210m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389743.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	V4K7S8	0.0	V4K7S8_EUTSA; Uncharacterized protein
STRING	XP_006389743.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Thhalv10018210m
Entrez Gene	18008083

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]