PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018249m
Common NameEUTSA_v10018249mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 651aa    MW: 74898.4 Da    PI: 4.8433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018249mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012621640221
                      EETTTTEEESSHHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                      +C  Cg+ F ++  L +Hi 
  Thhalv10018249m 621 ECDRCGEEFESRTKLFKHIA 640
                      5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.5E-23586IPR001623DnaJ domain
SuperFamilySSF465657.07E-236115IPR001623DnaJ domain
SMARTSM002716.8E-201073IPR001623DnaJ domain
PROSITE profilePS5007619.2311181IPR001623DnaJ domain
CDDcd062572.88E-151170IPR001623DnaJ domain
PfamPF002266.1E-201278IPR001623DnaJ domain
PRINTSPR006252.6E-141331IPR001623DnaJ domain
PRINTSPR006252.6E-143146IPR001623DnaJ domain
PRINTSPR006252.6E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.49E-14301355No hitNo description
SMARTSM004511.4E-7309343IPR003604Zinc finger, U1-type
PfamPF121713.6E-10311337IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82312336IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515620649IPR007087Zinc finger, C2H2
SMARTSM003554.3620644IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280622644IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MASSSRSEKR CLYEVLGISK ESSPDEIRSS YRRLALQRHP DKLIKAGGIS EAEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHG SDGGSKSRGM PGGSVPDLFA FFSTTVYSGY  120
SDTGKGFYKV YFDVFNSVYL NEIKFARTLG LRMDSVREAP IMGNLESPYA QVTAFYNYWL  180
GFSTVMDFCW VDEYDAMAGP NRKSRRLMEE ENKKVRKKAK REYNETVRGL AEFVKKRDKR  240
VIDMMVKKNA EMELKKAEER ERKKKMEKER LERAMKYEEP DWAKAQDVEE ELDVVEEDDD  300
DDDAAKRKNE QLYCIVCSKK FKSEKQWKNH EQSKKHKEKV AELRESFHAE DEKEREDEEE  360
NDGTLEPPET VEEELHEKFQ DGLNIDDEED VEEKEEVAGE ADETDEEYFV AEEYVKESSE  420
SEDEDVDDEM ALLKKMVSGQ KNKRKNVVSR KEDGAQVKIE SDTAEFSEFD NQKSTGRNRK  480
GKKERNKRNA GKDTTDDASE VQIPGDDGNA DDNVDATETA SGAFEDSQKD EPDLMEYDNR  540
KSTGRRRRSK KPKDKNNLGG LMEKSSEADD TKDRNGDMEE SHSETFEDRS EYIEHKKAPR  600
SKKSTRGMKT KGTSKKTSNN ECDRCGEEFE SRTKLFKHIA DTGHATVKSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xbl_A3e-11980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018249m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390445.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLV4M9A40.0V4M9A4_EUTSA; Uncharacterized protein
STRINGXP_006390445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein