PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018282m
Common NameEUTSA_v10018282mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 624aa    MW: 69037 Da    PI: 5.2137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018282mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.2e-09525573348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I +        Rt  ++k++w+++l
  Thhalv10018282m 525 AWTLSEVTKLVEGVSKYGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 573
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.459518577IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-13520579IPR009057Homeodomain-like
SMARTSM007172.0E-9522575IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-16524583IPR009057Homeodomain-like
CDDcd116601.26E-20524574No hitNo description
PfamPF002491.0E-6525573IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MGTVVGTVED CREMFEGSAQ TRITPFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDMHIASE SCQAVGYLPA DELPSRLSQI ESSEAISSGL LESDNVEPYT DQYNEEMLQK  120
VEQEERLDMT HGSQMPSTPP DANIKCSNEK DLFDEDQVHC EALLQEPVSF SSNVQNGCDM  180
NQSNTVETCS NAEASPKETA LPAAAQKPDF SLVRGEICLD NLPIKALQET FRATFGRETT  240
VKDKTWLKRR ITMGLVNSCN VPTTNLTIED NKLVRNQEKS NDVTDAVSED MGDDVRATNL  300
KDAPSSTDHM NGNPKASGHS LSVNHYCASE DFSCEERAAK RVRKPTRRYI EELSESEKQQ  360
NDKSMIPSKD QRVSEKPEVR SISVSSGKRV TVTRMVSLAG SEIEVPYVSH VRRSRPRENI  420
MALMESHSSC LEAKASSGES NRNLSPSQLT SEVVNRGSMV QSASVPVQKE FATSHNNNEE  480
HILSEVDQDM EPEHMDSSGN SSDDNNNIGA PIMQSSGLRR KHHRAWTLSE VTKLVEGVSK  540
YGAGKWSEIK KLSFSSYSYR TSVDLKDKWR NLLKASFAQS PSNNMGSLKK HGSMHIPMPI  600
LLRIRELAEK QSLVSPISKV ILR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018282m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845300.0AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
GenBankAY1248680.0AY124868.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY5195400.0AY519540.1 Arabidopsis thaliana MYB transcription factor (At1g72650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390637.10.0uncharacterized protein LOC18009454
TrEMBLV4KKV40.0V4KKV4_EUTSA; Uncharacterized protein
STRINGXP_006390637.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6