PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10018444m

Common Name

EUTSA_v10018444mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 498aa MW: 53876.2 Da PI: 5.537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018444m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.3e-09	323	371	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thhalv10018444m 323 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 371 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-17	318	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.83E-11	318	375	No hit	No description
PROSITE profile	PS50888	15.478	320	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-17	321	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	323	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	326	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MDISEKDEFS AEKRNRDDTT VNYDSVNNQQ TDWRVSGSNT YPQENLISAC ASSCSPSQMM 60 DSFGQTLWYD PTNVQSYGGF NGGGNASSSS FRGNIDRSLE MSWNLPTLLP PKGNNGLFLP 120 NAGSFLPPSM AQFPADSGFI ERAARFSLFS GGNFSDMVNQ PLGNPESIGL FLQGGGAMQV 180 QGQCPSSNEI NVGEAHNDAS RAVKEPNVRS SEQAKPNVPG SGNVSEDTQS SGGNGQKGGE 240 TSSKGFDSKK RKRNRQNSEA DQQHRNQQSE EEPDNNGDKK GNDEQSPNSP GNKTNSGKQQ 300 GKQTSDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML 360 DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDA LQLRAGSSSA APFPQNVSMV 420 YPPLPHGFMQ QTLSNIGRTI SSPLSPMNGG FKRQETNGWE GDLQNVIHIN YGAGDVPPDP 480 QAADTASLPA ANMKIEP*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MDISEKDEFS AEKRNRDDTT VNYDSVNNQQ TDWRVSGSNT YPQENLISAC ASSCSPSQMM  60
DSFGQTLWYD PTNVQSYGGF NGGGNASSSS FRGNIDRSLE MSWNLPTLLP PKGNNGLFLP  120
NAGSFLPPSM AQFPADSGFI ERAARFSLFS GGNFSDMVNQ PLGNPESIGL FLQGGGAMQV  180
QGQCPSSNEI NVGEAHNDAS RAVKEPNVRS SEQAKPNVPG SGNVSEDTQS SGGNGQKGGE  240
TSSKGFDSKK RKRNRQNSEA DQQHRNQQSE EEPDNNGDKK GNDEQSPNSP GNKTNSGKQQ  300
GKQTSDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML  360
DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDA LQLRAGSSSA APFPQNVSMV  420
YPPLPHGFMQ QTLSNIGRTI SSPLSPMNGG FKRQETNGWE GDLQNVIHIN YGAGDVPPDP  480
QAADTASLPA ANMKIEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018444m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391072.1	0.0	transcription factor bHLH49
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	V4KM38	0.0	V4KM38_EUTSA; Uncharacterized protein
STRING	XP_006391072.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10018444m
Entrez Gene	18007834

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]