PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018817m
Common NameEUTSA_v10018817mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 342aa    MW: 38162.5 Da    PI: 7.9489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018817mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.8e-15267291226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ +++tG C+yGd+C+FaHg
  Thhalv10018817m 267 KTELCNKWQETGACPYGDNCQFAHG 291
                      9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-19260298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-11263297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464265293IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8265292IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-12267291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-8299333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-12299332IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972303331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEKVASTVTD LACVTALNSP PPPLSPQSDN SNNNNNNNNN KQHQEEFAAS FASLYNSIFS  60
PESQFPSSLS LSPSPPSSSS PPPRVDTTTE HRLRQARLIL EYDELNEHYD LCLSRLQSLM  120
TELESLRREN DGLRQENVDL LKLIHISTSS SSSVSPPVGN NHNRNLNRRQ ISDFGSQAGD  180
NKHHRPVRKT NPERNSLPKS ISVRSPGYLK MINQGSHGGC GGSDRQASQF SFTSQLGSES  240
VSQKVCVPTK GERDALELEV YRQGMMKTEL CNKWQETGAC PYGDNCQFAH GIDELRPVIR  300
HPRYKTEVCR MIVTGATCPY GHRCHFRHSL TDQERMLLLT R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21267329567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018817m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132885e-88AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026845e-88CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391435.10.0zinc finger CCCH domain-containing protein 14
RefseqXP_024009317.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-133C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLV4MBY90.0V4MBY9_EUTSA; Uncharacterized protein
STRINGXP_006391435.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-125C3H family protein