PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018877m
Common NameEUTSA_v10018877mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 324aa    MW: 36723.4 Da    PI: 7.2118
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018877mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35.1e-1053107155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+  +++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  Thhalv10018877m  53 SSYRGVT--RWTGRYEAHLWDkNCWNEtQTKKGRQGAYDEEEAAARAYDLAALKYWG 107
                      67****7..48**********99999998888888********************98 PP
2AP253.94.5e-17150201155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Thhalv10018877m 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 201
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-1253116IPR016177DNA-binding domain
SMARTSM003805.6E-1754121IPR001471AP2/ERF domain
PfamPF008476.3E-554107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-1154115IPR001471AP2/ERF domain
PROSITE profilePS5103215.98854115IPR001471AP2/ERF domain
CDDcd000185.72E-25150211No hitNo description
PfamPF008471.6E-12150201IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-18150211IPR016177DNA-binding domain
SMARTSM003802.8E-26151215IPR001471AP2/ERF domain
PROSITE profilePS5103218.874151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18151210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKVSQRSKK TIVNDEISDK KAVAVASVSS SAFLKSKRKR KLPPQNAPPQ RSSSYRGVTR  60
WTGRYEAHLW DKNCWNETQT KKGRQGAYDE EEAAARAYDL AALKYWGRDT LLNFPLPTYE  120
EDVKEMEGHS REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAR AYDIAAIEYR GLNAVTNFDV SRYLNLPESK NPSAAANHLP DESDYYDSMP  240
VRNPNHEPRS PDGQTSSEDN DYTKTEETLD PEAIPSRRSF PDDIQTYFGC QDSGKLATEE  300
DVIFGGFNSF INPGFYNDFD YAP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018877m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010035.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotA0JPZ81e-145AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLV4K8230.0V4K823_EUTSA; Uncharacterized protein
STRINGXP_006389858.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-150AP2 family protein