PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018902m
Common NameEUTSA_v10018902mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 316aa    MW: 35572.2 Da    PI: 5.7619
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018902mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.9e-321064155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  Thhalv10018902m 10 KPRLKWTCELHQRFIEAVTQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 64
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.555767IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-28864IPR009057Homeodomain-like
SuperFamilySSF466894.3E-15964IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-221065IPR006447Myb domain, plants
PfamPF002495.4E-61263IPR001005SANT/Myb domain
PfamPF143797.5E-23112158IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSLVLSTDAK PRLKWTCELH QRFIEAVTQL GGPNKATPKG LMKAMEIPGL TLYHLKSHLQ  60
KYRLGKSLKF DDNKLEVSSA SETQESESKN DSREFRGSVN EENNNLANEG SQITEALQLQ  120
MEVQKKLHEQ IEVQRHLQVK IEAQGKYLQS VLMKAQQTLA GYTSSTLGMD FARTELSRLA  180
SLVNPSSSLS EVTQAEGYEE AEDVEEGFLW CKKPENRGIR LPRYSVESSL TSSESSETKL  240
NSNEDERKSM ELPLMEIKSE VRIGEKRSLN DVVCMEQQPI KKRDFGVDDE QHLRLSLNSY  300
KKDMGTCPNI GLGLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018902m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295161e-174BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390997.20.0myb family transcription factor PHL8
SwissprotF4I2741e-166PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLV4KLX10.0V4KLX1_EUTSA; Uncharacterized protein
STRINGXP_006390997.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-161G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]