PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019015m
Common NameEUTSA_v10019015mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 262aa    MW: 30254.3 Da    PI: 9.4983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019015mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17125212196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp +f+++h   ++++ ++tl de+ +++  k+  +k++    l++GW++F+ +++L +gD +vF+l+++++f  +v
  Thhalv10019015m 125 FVKSMLQSHVTGGFWLGLPHQFCRTHL--PHRDEMITLVDENDEEFLAKYLAEKNG----LSGGWRGFAIDHQLVDGDALVFHLINSTTF--KV 210
                      89************************4..346679***************666666....************************987777..65 PP

                      EE CS
               B3  95 kv 96 
                       +
  Thhalv10019015m 211 YI 212
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-20116214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-25118214IPR015300DNA-binding pseudobarrel domain
CDDcd100177.13E-26123214No hitNo description
SMARTSM010191.1E-21125216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.575125216IPR003340B3 DNA binding domain
PfamPF023629.5E-16125213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVESSELSYE QIRLKRVEEN KKRMFELNLN KLAQSLRVSS AKPCPAKTRM QRVPVDLSEV  60
RRSNRPKNPP PSYREMGLEP LERPRRTYQR RDLLNRVYAS DEARVYAVHK AEMLQSSLEP  120
GFPSFVKSML QSHVTGGFWL GLPHQFCRTH LPHRDEMITL VDENDEEFLA KYLAEKNGLS  180
GGWRGFAIDH QLVDGDALVF HLINSTTFKV YITRVYDEAN NDSDRNDKEN EIEINKKQEE  240
NCSEAGRLRS CSGKRKRGGR K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019015m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893122e-47AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389869.10.0B3 domain-containing protein At3g19184
SwissprotQ1G3M31e-121Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLV4JPP50.0V4JPP5_EUTSA; Uncharacterized protein
STRINGXP_006389869.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-104B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]