PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019036m
Common NameEUTSA_v10019036mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 253aa    MW: 28616.5 Da    PI: 8.9128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019036mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-1590133348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ rw +yl
  Thhalv10019036m  90 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDNEIRIRWETYL 133
                      79******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1868143IPR009057Homeodomain-like
PROSITE profilePS5129420.77583137IPR017930Myb domain
SMARTSM007171.8E-1487135IPR001005SANT/Myb domain
CDDcd001671.60E-1290133No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2090134IPR009057Homeodomain-like
PfamPF002493.0E-1490133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLLIIDHACL SQPTGPSQTS IYLLFPIYIY IYHLLLANNL TNNQVTISFE EVMNKIRLRA  60
LSPPSGLKRR AKQCRVRGRN NAKLELEQSN FSKDEDDLIL KLHALLGNRW SLIAGRLPGR  120
TDNEIRIRWE TYLKRKLEKM GIDPTNHRLY HHTNYISRRY LNSLHKEHEP NTTSDQSSSV  180
SESCDGMTTI LPVSSTNSSE YSTSAGHSRL PDLNIGPIPM KTTTSLPVCC LQDSSEPSNY  240
GSTSQETLLL FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-146913840109B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672LKRRAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019036m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390813.10.0transcription repressor MYB6
TrEMBLV4KAK90.0V4KAK9_EUTSA; Uncharacterized protein
STRINGXP_006390813.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.13e-88MYB-like 2