PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019038m
Common NameEUTSA_v10019038mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 252aa    MW: 27239.3 Da    PI: 8.4262
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019038mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.12.1e-332785259
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                     ++v YkeClkNhAa+lGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr++++
  Thhalv10019038m 27 MGVCYKECLKNHAANLGGHALDGCGEFMPSPTASsTDPSSLRCAACGCHRNFHRRDPSD 85
                     5789***************************999899******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-182982IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-272982IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.2E-313182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4533182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.41E-17143211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-26144211IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-28153210IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLSSKHKLP LTNNSPFAGN LTVAGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAS  60
STDPSSLRCA ACGCHRNFHR RDPSDHLNFL PTSSPSGTES PPSSHHVASP VPCSYYTSAP  120
HHVLLSLSSG FPGPSDQDPT GFRSENSSRG AMRKRTRTKF TPEQKTKMRA FAEKAGWKIN  180
GCDEKSVRGF CNEIGIERGV LKVWMHNNKY SLLSAKNREI SSMDHSRLCL NSRSFNNGGD  240
EGDNVDGSYS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-181522111675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019038m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893531e-180AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390994.10.0zinc-finger homeodomain protein 11
SwissprotQ9SEZ11e-139ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLV4JSK70.0V4JSK7_EUTSA; Uncharacterized protein
STRINGXP_006390994.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-114zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]