PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019045m
Common NameEUTSA_v10019045mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 248aa    MW: 27158 Da    PI: 4.9051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019045mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-184696155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Thhalv10019045m 46 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 96
                     59*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.92E-1846105No hitNo description
SuperFamilySSF541715.82E-2047105IPR016177DNA-binding domain
SMARTSM003805.8E-3447110IPR001471AP2/ERF domain
PfamPF008471.7E-114796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3047104IPR001471AP2/ERF domain
PROSITE profilePS5103221.91847104IPR001471AP2/ERF domain
PRINTSPR003676.0E-94859IPR001471AP2/ERF domain
PRINTSPR003676.0E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVKQERKLQV TTSSSSLSQP SSSSYSSSSS SSSLTLHHQS CKNKIKKYKG VRMRSWGSWV  60
SEIRAPNQKT RIWLGSYSTA EAAARAYDAA LLCLKGPKAN LNFPYITTTP PFLIGIDEKT  120
LLSPKSIQKI AAQAAISISS DPIAPPSSSN DDDDEHDSDL HHHPSPSSSA ASSPPEDHQN  180
DDDLVSLMGS FVDEHVSLMD LPSWYDDNEM YFINGASFDY SPQLISSKTT ILDDLYDDAD  240
IQLWSFS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019045m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390070.11e-179ethylene-responsive transcription factor ERF013
SwissprotQ9CAP41e-80ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLV4M8701e-178V4M870_EUTSA; Uncharacterized protein
STRINGXP_006390070.11e-179(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.19e-72ERF family protein