PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019048m
Common NameEUTSA_v10019048mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 247aa    MW: 27062 Da    PI: 7.9711
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019048mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.13.8e-304106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C + p++     +++q++++ +++k++G++ +++ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q
  Thhalv10019048m   4 SCNGCRVLRKGCSENCSIKPCLqwiksAESQANATVFLAKFYGRAGLMNLLNAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQ 97 
                      6*********************9999777889************************************************************** PP

           DUF260  90 lkaelallk 98 
                      +++e+++++
  Thhalv10019048m  98 AAVEAVMRG 106
                      ***998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0123109IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-254104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IKPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAITG  120
QSPPFNNNKL FDIRHVSRDE NGLKSRCRSS RGANKQERNV RSSLSHESSL SHESTVVKDE  180
GSMVSSEETM TEEPSWIGLE LTLGLEPAMA RESHVVVPMK KRKLERCGTC NDEDTCKIEL  240
GLVCSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019048m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738701e-133AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankAK2296501e-133AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBankBT0109431e-133BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116501e-133BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391473.10.0LOB domain-containing protein 40
SwissprotQ9ZW961e-130LBD40_ARATH; LOB domain-containing protein 40
TrEMBLV4KCC30.0V4KCC3_EUTSA; Uncharacterized protein
STRINGXP_006391473.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-128LOB domain-containing protein 40