PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019065m
Common NameEUTSA_v10019058mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Whirly
Protein Properties Length: 241aa    MW: 26185.1 Da    PI: 10.4384
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019065mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.21.5e-67632011139
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      +++k+kaal+v++v+ptf  ++ gnl+++r+G++++++++a +erkydWekkq falsatev++l++++s++s+effhdp++k+sn+G+vrk+l
  Thhalv10019065m  63 AIFKGKAALSVEPVLPTFARIEPGNLRIDRRGSVMMTFMPASGERKYDWEKKQLFALSATEVGSLISMGSNDSSEFFHDPSMKSSNAGQVRKSL 156
                      59******************************************************************************************** PP

           Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      +++P++dGsG+f++l+v+ns++k+ne+++vPv+ aef v++++++
  Thhalv10019065m 157 SIKPHADGSGYFISLTVNNSILKTNERIVVPVTTAEFVVMKTAFS 201
                      ******************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.4E-7352218IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.75E-6755218IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.7E-5964198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMKQARTLLS RSLCDQSKSL FEGNFKVSPL RGFATRADSS TSARGFSGKD AAKPSGRVFA  60
PYAIFKGKAA LSVEPVLPTF ARIEPGNLRI DRRGSVMMTF MPASGERKYD WEKKQLFALS  120
ATEVGSLISM GSNDSSEFFH DPSMKSSNAG QVRKSLSIKP HADGSGYFIS LTVNNSILKT  180
NERIVVPVTT AEFVVMKTAF SFALPHIMGW DRILGQADTA AQGITLHPKT DLPQLGVEWV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-105492182171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-105492182171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-105492182171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-105492182171Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019065m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390787.11e-178single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotQ8VYF71e-132WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLV4KLC61e-176V4KLC6_EUTSA; Uncharacterized protein
STRINGXP_006390788.11e-176(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-135WHIRLY 2